Publications

2015

Independent emergence of artemisinin resistance mutations among Plasmodium falciparum in Southeast Asia.
Takala-Harrison S, Jacob CG, Arze C, Cummings MP, Silva JC, Dondorp AM, Fukuda MM, Hien TT, Mayxay M, Noedl H, Nosten F, Kyaw MP, Nhien NT, Imwong M, Bethell D, Se Y, Lon C, Tyner SD, Saunders DL, Ariey F, Mercereau-Puijalon O, Menard D, Newton PN, Khanthavong M, Hongvanthong B, Starzengruber P, Fuehrer HP, Swoboda P, Khan WA, Phyo AP, Nyunt MM, Nyunt MH, Brown TS, Adams M, Pepin CS, Bailey J, Tan JC, Ferdig MT, Clark TG, Miotto O, MacInnis B, Kwiatkowski DP, White NJ, Ringwald P, Plowe CV. 2015.
PMID:25180241

Plasmodium falciparum field isolates from areas of repeated emergence of drug resistant malaria show no evidence of hypermutator phenotype.
Brown TS, Jacob CG, Silva JC, Takala-Harrison S, Djimdé A, Dondorp AM, Fukuda M, Noedl H, Nyunt MM, Kyaw MP, Mayxay M, Hien TT, Plowe CV, Cummings MP. 2015.
Infect Genet Evol. 30:318-22. doi: 10.1016/j.meegid.2014.12.010. Epub 2014 Dec 13.
PMID: 25514047

Examination of the Enterotoxigenic Escherichia coli Population Structure during Human Infection.
Sahl JW, Sistrunk JR, Fraser CM, Hine E, Baby N, Begum Y, Luo Q, Sheikh A, Qadri F, Fleckenstein JM, Rasko DA. 2015.
MBio. 6(3):e00501. doi: 10.1128/mBio.00501-15
PMID: 26060273

RNA-Seq analysis of isolate- and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates.
Hazen TH, Daugherty SC, Shetty A, Mahurkar AA, White O, Kaper JB, Rasko DA. 2015.
Front Microbiol., 6:569. doi: 10.3389/fmicb.2015.00569.
PMID:26124752

Diarrhea, bacteremia and multiorgan dysfunction due to an extraintestinal pathogenic Escherichia coli strain with enteropathogenic E. coli genes.
Kessler R, Nisa S, Hazen TH, Horneman A, Amoroso A, Rasko DA, Donnenberg MS. 2015.
Pathog Dis. 73(8):ftv076. doi: 10.1093/femspd/ftv076.
PMID:26410828

Comparative Genomics Provides Insight into the Diversity of the Attaching and Effacing Escherichia coli Virulence Plasmids.
Hazen TH, Kaper JB, Nataro JP, Rasko DA. 2015.
Infect Immun. 83(10):4103-17. doi: 10.1128/IAI.00769-15.
PMID:26238712

Transcriptomic analysis of vulvovaginal candidiasis identifies a role for the NLRP3 inflammasome.
Bruno VM, Shetty AC, Yano J, Fidel PL Jr, Noverr MC, Peters BM. 2015.
MBio. 6(2). pii: e00182-15. doi: 10.1128/mBio.00182-15.
PMID:25900651

New signaling pathways govern the host response to C. albicans infection in various niches.
Liu Y, Shetty AC, Schwartz JA, Bradford LL, Xu W, Phan QT, Kumari P, Mahurkar A, Mitchell AP, Ravel J, Fraser CM, Filler SG, Bruno VM. 2015.
Genome Res. 25(5):679-89. doi: 10.1101/gr.187427.114.
PMID:25858952

The genome sequence of four isolates from the family Lichtheimiaceae.
Chibucos MC, Etienne KA, Orvis J, Lee H, Daugherty S, Lockhart SR, Ibrahim AS, Bruno VM. 2015.
Pathog Dis. 73(5). pii: ftv024. doi: 10.1093/femspd/ftv024.
PMID:25857734

Candida albicans adapts to host copper during infection by swapping metal cofactors for superoxide dismutase.
Li CX, Gleason JE, Zhang SX, Bruno VM, Cormack BP, Culotta VC. 2015.
Proc Natl Acad Sci USA. 112(38):E5336-42. doi: 10.1073/pnas.1513447112.
PMID:26351691

Implementation of a Pan-Genomic Approach to Investigate Holobiont-Infecting Microbe Interaction: A Case Report of a Leukemic Patient with Invasive Mucormycosis.
Shelburne SA, Ajami NJ, Chibucos MC, Beird HC, Tarrand J, Galloway-Peña J, Albert N, Chemaly RF, Ghantoji SS, Marsh L, Pemmaraju N, Andreeff M, Shpall EJ, Wargo JA, Rezvani K, Alousi A, Bruno VM, Futreal PA, Petrosino JF, Kontoyiannis DP.
PLoS One. 2015. 10(11):e0139851. doi: 10.1371/journal.pone.0139851.
PMID: 26556047

Designing malaria vaccines to circumvent antigen variability.
Ouattara A, Barry AE, Dutta S, Remarque EJ, Beeson JG, Plowe CV.
Vaccine. 2015. 33(52):7506-12. doi: 10.1016/j.vaccine.2015.09.110. Epub 2015 Nov 1.
PMID: 26475447

2014

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG.
J. Crabtree, S. Agrawal, A. Mahurkar, G.S. Myers, D.A. Rasko and O. White. 2014.
Bioinformatics. 30(21):3125-7.
PMID: 25075113

Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis.
Tallon LJ, Liu X, Bennuru S, Chibucos MC, Godinez A, Ott S, Zhao X, Sadzewicz L, Fraser CM, Nutman TB, Dunning Hotopp JC. 2014.
BMC Genomics. 2014 Sep 12;15:788. doi: 10.1186/1471-2164-15-788.
PMID: 25217238

Vaccines Against Malaria.
Ouattara A, Laurens MB. 2015.
Clin Infect Dis. 60(6):930-6. doi: 10.1093/cid/ciu954. Epub 2014 Dec 1.
PMID: 25452593

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University of Maryland
School of Medicine
Institute for Genome Sciences
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410-706-1481 | 410-607-1482(fax)